SRR3129001.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3129001.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12822255
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	470571	3.669955089802847	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	46343	0.36142628578202507	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	22744	0.17737909595465073	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	22272	0.17369799617929918	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	22102	0.17237217634495647	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	20345	0.15866943841001446	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	19023	0.14835923946294938	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	16428	0.12812098963871799	No Hit
ATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTGGTAACTATGGTGGT	14312	0.11161843217125224	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13013	0.10148760884883354	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	133970	89.10764	1
ATAGGGC	6195	71.491425	3
ATAGGGA	9340	70.72514	3
AGGGACT	26225	70.04477	5
GGTAAGG	7260	68.44305	1
GACTTAA	19170	68.248535	8
AGTAGGG	19015	68.22185	2
ATAGAGG	8885	67.31164	1
AGATAGG	6420	66.770615	1
GTAGGGA	9230	66.62702	3
TAGTAGG	4825	66.51033	1
GTTTTTT	181685	65.952866	2
GGATAGG	6805	65.89718	1
ACTTAAT	19855	65.657265	9
GGACTTA	20380	65.48779	7
AAGGGGC	44280	65.46035	4
TATAGGG	9350	65.172066	2
AATAGGG	17230	65.16541	2
TAGGGAT	6340	65.11156	4
TAGAGGG	23425	64.7921	2