Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128989.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1947618 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12651 | 0.6495626965862916 | No Hit |
CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC | 3905 | 0.20050133034301387 | TruSeq Adapter, Index 27 (100% over 24bp) |
GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG | 3881 | 0.19926905584154594 | TruSeq Adapter, Index 27 (95% over 24bp) |
CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG | 3831 | 0.19670181729682107 | TruSeq Adapter, Index 27 (95% over 24bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 4970 | 0.0 | 77.71987 | 1 |
ATAGGGC | 1010 | 0.0 | 71.65804 | 3 |
TAGGGCA | 750 | 0.0 | 70.808075 | 4 |
GGATAGG | 1275 | 0.0 | 70.48042 | 1 |
AGTAGGG | 3090 | 0.0 | 70.41872 | 2 |
GGTAAGG | 1255 | 0.0 | 69.72917 | 1 |
AGTAAGG | 1215 | 0.0 | 69.31417 | 1 |
TAGTAGG | 865 | 0.0 | 68.533005 | 1 |
GAATAGG | 1075 | 0.0 | 68.274956 | 1 |
AGGGATG | 2275 | 0.0 | 67.96418 | 5 |
GTAGGGA | 1320 | 0.0 | 67.646484 | 3 |
TAGAGGG | 3380 | 0.0 | 67.435814 | 2 |
AAGGGTA | 1370 | 0.0 | 67.23588 | 4 |
CGTAGGG | 525 | 0.0 | 67.13787 | 2 |
TATAGGG | 1660 | 0.0 | 66.531204 | 2 |
AGGGCAT | 1350 | 0.0 | 66.143234 | 5 |
AAGGGGC | 5765 | 0.0 | 65.70544 | 4 |
GTAGGGC | 725 | 0.0 | 64.82277 | 3 |
ATAGAGG | 1370 | 0.0 | 64.56283 | 1 |
ATAACGG | 95 | 0.0 | 64.38209 | 1 |