SRR3128966.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128966.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1560204
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12862	0.824379376030314	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	7465	0.4784630727776624	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	6306	0.4041779151957052	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	5001	0.3205350069606282	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	3498	0.2242014505795396	No Hit
AGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	2198	0.14087901325724073	No Hit
GGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	2174	0.13934075287590597	No Hit
ACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1575	0.10094833752509287	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5025	80.433105	1
GGTAAGG	735	78.74001	1
ATAGCGG	415	78.23097	1
AGGGAAT	1720	76.78109	5
AGTAAGG	935	75.98766	1
TAGGGAT	890	73.928925	4
AGATAGG	770	73.32773	1
ATAGGGA	1290	72.86462	3
TAAGCGG	420	72.81851	1
AAGGGTA	870	72.38723	4
ATAGGGC	920	72.02905	3
GAATAGG	850	71.96182	1
AGGGATG	2535	71.93333	5
TATAGGG	970	71.26667	2
TAAGGGA	1275	71.14158	3
GTAGGGC	820	71.06966	3
ACTAGGG	805	70.68551	2
GACTAGG	360	70.57794	1
TAGGGCA	695	70.32746	4
CGTAGGG	410	69.96597	2