Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128821.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1917029 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11561 | 0.6030686025094039 | No Hit |
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC | 4105 | 0.21413343251458378 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG | 3143 | 0.1639516147121405 | No Hit |
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG | 2931 | 0.1528928357369659 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 5055 | 0.0 | 76.8038 | 1 |
CGTAGGG | 575 | 0.0 | 75.195496 | 2 |
AGGGATG | 2545 | 0.0 | 72.75603 | 5 |
TAGGGTA | 575 | 0.0 | 72.74346 | 4 |
ATAGCGG | 350 | 0.0 | 72.60652 | 1 |
ATAGGGA | 1470 | 0.0 | 71.295044 | 3 |
AGGGCAT | 1605 | 0.0 | 70.85995 | 5 |
ATAAGGG | 2640 | 0.0 | 70.6738 | 2 |
GTAGGGT | 675 | 0.0 | 70.32171 | 3 |
GAATAGG | 1355 | 0.0 | 69.11363 | 1 |
GGTAAGG | 980 | 0.0 | 68.66887 | 1 |
CGAAGGG | 2360 | 0.0 | 68.30523 | 2 |
AGGGTAC | 890 | 0.0 | 68.11774 | 5 |
TAGACGG | 230 | 0.0 | 67.52056 | 1 |
TAAGGGA | 1705 | 0.0 | 67.256966 | 3 |
AAGGGAT | 3220 | 0.0 | 66.846924 | 4 |
ACGGGAT | 600 | 0.0 | 66.579346 | 4 |
ATAGGGC | 975 | 0.0 | 66.51909 | 3 |
TAGAGGG | 3475 | 0.0 | 66.404655 | 2 |
AGTACGG | 270 | 0.0 | 66.23229 | 1 |