SRR3128743.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128743.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1861803
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13591	0.72999130412831	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6757	0.36292776410823274	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	4759	0.2556124359021873	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	3949	0.2121062217646013	No Hit
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	3837	0.20609054771100915	No Hit
AAAGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	1893	0.1016756337808028	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	265	85.12598	4
AGGGATG	5025	82.206825	5
AGGGTAC	1280	79.30469	5
AGGGAAT	2010	78.55942	5
AAGGGTA	1465	78.274254	4
CGTTTTT	4860	78.12994	1
AAGGGAT	3885	75.726875	4
GAGGGAT	3030	75.22563	4
TATAGGG	1475	73.92013	2
CGTAGGG	435	73.465996	2
GATGACC	3470	73.26944	8
GAATAGG	980	72.97897	1
TAGGGCA	825	72.915985	4
ATGGCAC	3785	72.88317	9
TAGGGTA	775	72.768974	4
CTACGAC	1315	72.54798	5
GGGATGA	4075	72.54009	6
GGATGGC	4215	71.58013	7
CGGGATG	1065	71.485916	5
GGATGAC	3715	71.34694	7