Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128714.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 206972 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC | 1283 | 0.6198906132230447 | No Hit |
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG | 1166 | 0.5633612276056665 | No Hit |
CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG | 886 | 0.42807722783758195 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 456 | 0.22031965676516632 | No Hit |
AGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT | 422 | 0.2038923139361846 | No Hit |
GGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT | 287 | 0.13866609976228667 | No Hit |
ACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG | 281 | 0.13576715691011346 | No Hit |
AAGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA | 265 | 0.12803664263765147 | No Hit |
AGAGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTT | 259 | 0.12513769978547823 | No Hit |
GCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT | 244 | 0.11789034265504512 | No Hit |
AGGCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTT | 240 | 0.11595771408692962 | No Hit |
AAAGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTT | 218 | 0.1053282569622944 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATAGCGG | 25 | 4.8514994E-7 | 94.17913 | 1 |
ACCGAGG | 15 | 6.8421604E-4 | 94.17913 | 1 |
CATACGG | 40 | 9.094947E-12 | 94.17913 | 1 |
GGTTAGG | 25 | 4.8514994E-7 | 94.17913 | 1 |
CTAGCGG | 15 | 6.8421604E-4 | 94.17913 | 1 |
TTAGGGT | 15 | 6.8949955E-4 | 93.9971 | 3 |
GGAATCG | 20 | 1.8346029E-5 | 93.9971 | 7 |
GGGTACG | 20 | 1.8346029E-5 | 93.9971 | 6 |
TTCACGA | 15 | 6.8949955E-4 | 93.9971 | 9 |
ACGGGTA | 30 | 1.3207682E-8 | 93.9971 | 4 |
GCACCGA | 25 | 4.907761E-7 | 93.9971 | 8 |
GCGATAG | 25 | 4.907761E-7 | 93.9971 | 8 |
TCGAGCG | 15 | 6.8949955E-4 | 93.9971 | 94 |
CGATAGG | 15 | 6.8949955E-4 | 93.9971 | 9 |
CGAGGGT | 55 | 0.0 | 85.45191 | 3 |
AGTAAGG | 155 | 0.0 | 85.065025 | 1 |
AGGGATG | 155 | 0.0 | 84.90061 | 5 |
GGGTAGT | 50 | 0.0 | 84.59739 | 6 |
CGTTTTT | 635 | 0.0 | 83.79718 | 1 |
TAGCGGG | 90 | 0.0 | 83.6338 | 2 |