SRR3128682.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128682.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3024115
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25188	0.8329048333148706	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	9992	0.33041071520097615	No Hit
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	4993	0.1651061550238665	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	4361	0.14420747888225152	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	4218	0.1394788227299557	TruSeq Adapter, Index 14 (95% over 21bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGAGGCGTA	3269	0.1080977409919927	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	3086	0.10204638381807571	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8980	83.052025	1
AGGGATG	6825	76.779305	5
AGGGAAT	4260	72.37127	5
AAGGGAT	6225	71.72144	4
ATAGGGC	2020	70.95877	3
TAGGGCA	1660	70.77774	4
GAGGGAT	5145	70.33478	4
TAGACGG	395	70.239	1
TAAGGGA	3070	70.11076	3
TCCGCTA	2130	69.984695	1
GGATGGC	4670	69.83935	7
TAGCGGG	1595	69.53587	2
CTACGAC	2150	69.51213	5
CGCTACG	2160	69.18803	3
ACGACCA	2110	69.04574	7
TACGACC	2170	68.43605	6
ATAGCGG	655	68.203354	1
AGACGGG	2065	67.5918	2
CGTAGGG	900	67.36042	2
GGTAAGG	1805	67.21495	1