SRR3128616.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128616.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	672664
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6366	0.946386308766338	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGAGTTAC	5941	0.8832046906033324	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	3695	0.5493084214407193	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	3005	0.44673120607019257	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	2875	0.4274050640438614	TruSeq Adapter, Index 27 (95% over 22bp)
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2174	0.32319255973264516	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATG	2059	0.3060963571708907	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1729	0.25703768895020396	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	1153	0.1714080135104599	No Hit
ACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	1135	0.1687320861529679	TruSeq Adapter, Index 27 (95% over 21bp)
ATCCGTACACCCACACCTGTCTCTTATACACATCTGACGCGGAGTTACTC	1107	0.16456953248575812	No Hit
AGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	1005	0.14940594412663677	No Hit
AGAGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTT	817	0.12145736950394254	No Hit
GGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	749	0.11134831059786164	No Hit
ATCCGTACACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC	746	0.1109023227049463	No Hit
ATCCGTACACCCACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGT	705	0.10480715483510342	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTT	702	0.10436116694218808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	55	0.0	94.018364	3
ACGAATT	20	1.8355584E-5	94.018364	4
GGCGATG	90	0.0	88.77532	7
CGTTTTT	3120	0.0	87.427864	1
GGGCGAT	180	0.0	86.16428	6
TAAGCGG	150	0.0	84.6543	1
GACCGAT	45	2.7284841E-11	83.553246	8
GTACGGG	80	0.0	82.26607	2
ATAGCGG	115	0.0	81.79159	1
TAAGGGA	500	0.0	80.85579	3
AGGGAAT	1090	0.0	80.64279	5
GTAGGGC	315	0.0	80.587166	3
CGCTACG	280	0.0	80.587166	3
CGTAGGG	125	0.0	78.975426	2
AGGGCAC	625	0.0	78.96956	5
TAGGGCA	405	0.0	78.92899	4
CGAAGGG	590	0.0	78.879814	2
AGAGGGT	555	0.0	78.77214	3
AGGGCAT	645	0.0	78.7072	5
TAGAGGG	1090	0.0	78.4924	2