Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128613.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1143134 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10558 | 0.9236012575953476 | No Hit |
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC | 5949 | 0.5204114303310023 | Illumina Single End Adapter 1 (95% over 21bp) |
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCGCTAGT | 5734 | 0.501603486555382 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 5581 | 0.48821922889180097 | No Hit |
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 5235 | 0.457951561234291 | No Hit |
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 4911 | 0.4296084273584724 | No Hit |
ATCCGTACACCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATG | 2048 | 0.17915659931381625 | No Hit |
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA | 1932 | 0.1690090575558071 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT | 1629 | 0.1425029786534212 | No Hit |
ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG | 1613 | 0.14110331772128204 | No Hit |
AAAGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT | 1556 | 0.13611702565053616 | No Hit |
AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT | 1502 | 0.1313931700045664 | No Hit |
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCTCG | 1408 | 0.12317016202824865 | No Hit |
ATCCGTACACCCACACCTGTCTCTTATACACATCTGACGCTCGCTAGTTC | 1378 | 0.12054579778048768 | No Hit |
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC | 1287 | 0.11258522622894604 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 4505 | 0.0 | 86.31355 | 1 |
GTACGGG | 260 | 0.0 | 84.946556 | 2 |
CGGGAAT | 360 | 0.0 | 84.84985 | 5 |
CGCTACG | 1175 | 0.0 | 83.58525 | 3 |
GCTACGA | 1180 | 0.0 | 83.234726 | 4 |
AGGGATG | 2965 | 0.0 | 82.73439 | 5 |
TCCGCTA | 1205 | 0.0 | 82.331055 | 1 |
AGTACGG | 120 | 0.0 | 82.28228 | 1 |
CCGTCCA | 40 | 1.036824E-9 | 82.2355 | 3 |
GTAGCGG | 225 | 0.0 | 81.49864 | 1 |
CGAAGGG | 815 | 0.0 | 81.298546 | 2 |
CGAGGGA | 845 | 0.0 | 80.636665 | 3 |
CGACCAA | 1210 | 0.0 | 80.00592 | 8 |
CTACGAC | 1235 | 0.0 | 79.90843 | 5 |
AATGCGG | 160 | 0.0 | 79.34363 | 1 |
AGGGAAT | 2565 | 0.0 | 79.330605 | 5 |
ACGGGTA | 95 | 0.0 | 79.14739 | 4 |
TAAGGGA | 1245 | 0.0 | 78.88569 | 3 |
ACGACCA | 1230 | 0.0 | 78.322945 | 7 |
AGCGGGA | 865 | 0.0 | 78.22897 | 3 |