SRR3128612.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128612.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1273869
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13226	1.0382543259942743	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6311	0.4954198587138866	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	6296	0.49424234360048014	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	5900	0.4631559446065491	No Hit
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	5445	0.42743798616655243	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCGCTAGT	3171	0.24892669497413	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	1809	0.14200832267682154	No Hit
AGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	1809	0.14200832267682154	No Hit
AAAGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	1778	0.13957479144244817	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCTCG	1553	0.12191206474135095	No Hit
ACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1524	0.11963553552209842	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1505	0.11814401637845022	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	175	88.68168	1
CGTTTTT	5400	86.65374	1
TGCGAGG	190	84.155655	1
AATGCGG	275	83.79563	1
CGGGATG	540	83.553116	5
CTAGCGG	170	82.99087	1
TCCGCTA	1125	82.76957	1
CGCTACG	1110	82.14175	3
AGGGATG	3430	81.9393	5
ACGGGTA	155	81.868576	4
GCTACGA	1115	81.77339	4
CGGGAAT	480	81.26846	5
GCGGGAT	615	81.00576	4
GCGGGTA	175	80.56908	4
CGAGGGA	1015	80.56907	3
CGAAGGG	965	80.37296	2
GTACGGG	200	79.91021	2
CGTAGGG	290	79.423935	2
CTACGAC	1150	79.28464	5
ACGACCA	1135	78.67612	7