Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128566.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2516162 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22328 | 0.8873832447990233 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 3137 | 0.12467400747646613 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7520 | 0.0 | 82.84188 | 1 |
ATAGCGG | 660 | 0.0 | 74.85575 | 1 |
GAATAGG | 1735 | 0.0 | 71.324066 | 1 |
GTAGGGT | 975 | 0.0 | 70.37222 | 3 |
ATAGGGC | 1590 | 0.0 | 70.04938 | 3 |
CGTAGGG | 670 | 0.0 | 68.767876 | 2 |
AGTAGGG | 4345 | 0.0 | 68.70973 | 2 |
GGTAAGG | 1605 | 0.0 | 68.30629 | 1 |
GGATAGG | 1700 | 0.0 | 67.81051 | 1 |
ATAGGGA | 2420 | 0.0 | 67.38561 | 3 |
AGGGATG | 4185 | 0.0 | 67.376564 | 5 |
AGTAAGG | 1750 | 0.0 | 66.67967 | 1 |
ATGCGGG | 1305 | 0.0 | 66.64929 | 2 |
AAGAGGG | 8635 | 0.0 | 66.2617 | 2 |
GTAGGGC | 1195 | 0.0 | 65.675224 | 3 |
TAAGGGA | 2290 | 0.0 | 65.67008 | 3 |
TAGGGCG | 425 | 0.0 | 65.240326 | 4 |
TAGGGCA | 1300 | 0.0 | 65.07021 | 4 |
AGGGAAT | 2720 | 0.0 | 64.44556 | 5 |
AGGGACT | 3200 | 0.0 | 64.17776 | 5 |