SRR3128562.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128562.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2440787
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20003	0.8195307497131049	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	5941	0.24340509843751215	TruSeq Adapter, Index 21 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	5673	0.23242503340111204	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	5417	0.22193661306783427	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3734	0.15298344345491843	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTATAGGAC	3403	0.13942224372712572	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3050	0.12495969537694195	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2854	0.11692949855927617	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6930	83.47221	1
CGTAGGG	650	76.64393	2
CGTACAC	1595	73.66557	4
AGGGATG	4195	73.4964	5
ACGGGTA	335	72.95311	4
GTAGGGC	1095	72.1075	3
TAGGGCG	365	72.1075	4
GTACGGG	505	71.661285	2
GGTAAGG	1275	71.18971	1
CCGTACA	1645	71.1408	3
AGGGAAT	2925	70.86093	5
AGTAGGG	3865	70.16355	2
TAGCGGG	1355	69.71754	2
AGGGCAT	1985	69.374725	5
TAAGCGG	590	69.34854	1
TAAGGGA	2225	69.28338	3
GTAGGGA	1880	68.49802	3
TATAGGG	1875	68.430016	2
TAGGGCA	1120	68.3998	4
TCCGTAC	1795	68.33785	2