SRR3128543.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128543.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	750524
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7042	0.9382777899174444	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4347	0.5791953355255794	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2469	0.3289701595152187	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2096	0.2792715489444708	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	1952	0.26008495397882014	TruSeq Adapter, Index 22 (95% over 21bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTCAATCC	1927	0.2567539479083947	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	912	0.12151510144912088	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCGTC	849	0.11312096615164872	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	799	0.1064589540107978	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	771	0.10272822721192128	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	769	0.10246174672628723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGACGG	30	1.3145836E-8	94.10906	1
CGCTACG	830	0.0	86.63505	3
CGTTTTT	3185	0.0	86.13121	1
CGTAGGG	260	0.0	84.96376	2
GCTACGA	850	0.0	84.59658	4
AGGGATG	2410	0.0	83.075485	5
TCCGCTA	885	0.0	81.880196	1
ACGACCA	840	0.0	81.68718	7
CTACGAC	885	0.0	81.25095	5
CGAAGGG	735	0.0	80.57354	2
ATAGCGG	100	0.0	79.9927	1
AGCGGGA	525	0.0	78.77777	3
GGATGGC	1645	0.0	78.56825	7
TAGGGCA	455	0.0	78.50233	4
AGGGCAA	680	0.0	78.099785	5
CGAGGGA	530	0.0	78.03458	3
AAGGGAT	2440	0.0	78.00914	4
CAGGGAT	710	0.0	77.44758	4
GTAGGGC	390	0.0	77.12509	3
AAGGGCA	1185	0.0	76.94204	4