SRR3128541.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128541.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1791582
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14515	0.8101778204960756	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	3615	0.20177697699575015	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	3417	0.19072529194868	TruSeq Adapter, Index 23 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2870	0.1601936165913701	TruSeq Adapter, Index 22 (95% over 21bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2082	0.11621014276767684	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCGTTCTAC	1860	0.10381885953308304	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1829	0.10208854520753166	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4855	82.216644	1
TAGGGCA	880	76.90658	4
ATAGCGG	325	76.67148	1
CGTAGGG	500	72.37763	2
ATAGGGC	1020	71.88	3
TAGGGTA	735	70.97727	4
TAAGGGA	1785	70.82682	3
ATAGGGA	1460	70.497696	3
TATAGGG	1195	70.00608	2
CGAAGGG	1745	69.757034	2
GTACGGG	310	69.73966	2
AGTAGGG	2605	69.64072	2
GAATAGG	1035	69.50121	1
GTAGGGC	860	69.40471	3
AGGGATG	2490	68.51584	5
AGGGCAT	1495	67.58977	5
AGAGGGC	2705	67.23995	3
AGATAGG	1050	67.16504	1
TAGACGG	205	66.509766	1
TAGCGGG	905	66.47297	2