SRR3128533.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128533.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1609901
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15641	0.9715504245292103	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	4132	0.25666174503898065	RNA PCR Primer, Index 10 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	3884	0.24125707108697989	RNA PCR Primer, Index 35 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	3663	0.22752951889588244	TruSeq Adapter, Index 10 (95% over 23bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGTTTGTC	3341	0.2075282890065911	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2374	0.1474624837179429	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1981	0.12305104475368361	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1699	0.10553443969536014	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5515	82.679596	1
ACGGGTA	170	74.64171	4
GTAGGGC	680	73.25945	3
TAGGGCG	325	72.30251	4
AGTAGGG	2625	71.65398	2
CGTAGGG	520	71.43866	2
AGGGCAT	1545	69.65844	5
AGGGATG	2155	69.5681	5
ATAGGGA	1515	69.48676	3
TAGGGCA	725	69.36055	4
AGTAAGG	945	69.215454	1
TAAGCGG	315	68.71751	1
ACTAGGG	825	67.827	2
AAGGGTA	1030	67.52914	4
GAATAGG	915	67.37058	1
CGAAGGG	1655	67.053825	2
GGTAAGG	1060	67.03339	1
ATAGGGC	940	66.49524	3
GGTCGAT	85	66.34818	6
AAGAGGG	5010	66.26383	2