SRR3128520.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128520.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1810217
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15510	0.8568033556197958	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	4796	0.2649406120923624	Illumina PCR Primer Index 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	4398	0.24295429774441407	RNA PCR Primer, Index 10 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	4232	0.23378412643346075	TruSeq Adapter, Index 10 (95% over 23bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTGATTACC	3313	0.18301673224812273	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1866	0.10308156425445127	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1830	0.10109285240388306	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5120	80.72497	1
ATAGCGG	375	78.99475	1
AGTAGGG	2595	76.06291	2
GGTAAGG	955	72.86975	1
ATAGGGC	1015	72.69334	3
CGTAGGG	570	72.555244	2
AAGGGTA	1380	72.537315	4
AGGGTAC	820	71.64026	5
ATAGGGA	1765	70.82684	3
AGATAGG	910	69.75596	1
TATAGGG	1515	69.175644	2
CCGTACA	1460	68.88456	3
ACTAGGG	835	68.664825	2
GTACGGG	445	68.64586	2
AGGGAAT	2120	67.83386	5
TCCGTAC	1555	67.3962	2
CGAGGGA	855	67.05863	3
ATCCGTA	1570	66.78734	1
AGGGATG	2015	66.47078	5
TGTAGGG	1075	66.45017	2