SRR3128516.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128516.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2158302
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63035	2.920582939736886	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT	6068	0.28114693865826007	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT	5760	0.26687646121812425	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	5691	0.26367950360978215	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	4681	0.21688345745868742	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	2884	0.13362356148490803	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	2790	0.12926828590252892	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTC	2769	0.12829529880433788	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18970	88.017815	1
TAGGGCA	1160	74.145035	4
ATAGGGC	1345	73.38139	3
AGGGAAT	2315	72.07196	5
AGGGATG	3130	71.0241	5
GTAGGGC	980	70.49856	3
AGTAGGG	3285	69.97339	2
TAAGGGA	1880	69.74857	3
AGATAGG	1100	68.85969	1
AGGGCAT	1775	68.57888	5
TAGAGGG	3620	68.43235	2
GGTAAGG	1330	68.271194	1
TAGGGTC	495	67.412766	4
TAGGGAT	1425	66.6232	4
ATAGGGA	1920	66.58197	3
AGAGGGC	3125	66.32505	3
GAATAGG	1185	65.905495	1
GTAGGGA	1855	65.874664	3
AGTAAGG	1365	65.83132	1
AAGAGGG	6480	65.649734	2