SRR3128489.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128489.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2361100
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57609	2.439922070221507	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	6503	0.27542247257634156	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	5933	0.25128118249968234	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	5920	0.2507305916733726	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	5441	0.23044343738088177	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	4905	0.20774215408072508	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	2919	0.12362881707678625	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2656	0.11248994112913473	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	2506	0.10613697005632967	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18470	87.81989	1
ATAGGGC	1360	73.26095	3
ATAGCGG	580	71.39588	1
ATAGGGA	1990	70.61446	3
TATAGGG	1675	70.44264	2
AGTAGGG	3510	69.37442	2
AGGGATG	3450	69.20225	5
TAGGGCA	1110	67.74427	4
TAGAGGG	3865	67.016045	2
ATGAGGG	3525	66.412056	2
GTAGGGC	1130	66.12934	3
ATAGAGG	1420	65.945206	1
GATAGGG	3155	65.70766	2
TAGGGTA	680	65.658394	4
AGAGGGC	3385	65.25514	3
AGGGAAT	2320	64.419106	5
AATAGGG	3270	64.40313	2
TAGCGGG	1550	64.29555	2
GTAGGGT	710	64.20797	3
AAGGGAT	3450	64.0257	4