SRR3128475.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128475.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2112494
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17458	0.826416548402031	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4626	0.2189828704838925	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3558	0.16842651387412225	Illumina PCR Primer Index 2 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3278	0.15517203835845214	Illumina PCR Primer Index 2 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	3133	0.14830811353783727	Illumina PCR Primer Index 2 (95% over 24bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCCTGTAAC	2767	0.13098262054235418	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2354	0.1114322691567408	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5665	81.77095	1
CGTAGGG	730	75.3212	2
AGGGATG	4025	74.26365	5
CCGTACA	1545	74.21908	3
ATAGGGC	1095	73.81906	3
TAGGGCA	1035	73.55957	4
GAATAGG	1255	73.07244	1
TCCGTAC	1620	72.81367	2
CGTACAC	1585	72.347755	4
ACGGGTA	275	71.776306	4
GGTAAGG	1450	71.678185	1
AGTAGGG	3220	71.66051	2
ATAGAGG	1300	71.62829	1
GTAGGGC	1125	71.432816	3
ATAGGGA	2055	70.207054	3
AGATAGG	1075	69.558685	1
TAAGGGA	2075	69.530365	3
TAGGGAT	1740	69.41421	4
GTAGGGA	1985	69.36834	3
GAGGGAT	2970	69.149574	4