SRR3128445.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128445.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1310607
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5689	0.43407367731135266	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTGTGAGA	5259	0.40126445227287816	No Hit
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	3280	0.25026571657255	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	3172	0.2420252600512587	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	2940	0.2243235386351515	Illumina Single End Adapter 1 (95% over 21bp)
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2013	0.153592953494068	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATG	1588	0.12116523107231993	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGAAGGG	970	86.73146	2
CGTTTTT	4235	83.07274	1
GCGGGAT	665	81.274635	4
CGTAGGG	270	78.332886	2
ACGGGAT	705	76.66331	4
AGCGGGA	1030	76.203445	3
AGGGATT	2560	75.82089	5
CGGGATA	355	75.46148	5
TAGCGGG	635	74.755486	2
CGGGATC	445	73.92934	5
CCGTACA	2215	73.62938	3
ATCCGTA	2385	73.36094	1
TCCGTAC	2350	73.199585	2
AAGGGAT	3555	73.10791	4
AGGGCAC	1190	73.064026	5
TAAGCGG	245	72.950424	1
CGTACAC	2250	72.69014	4
AAGGGCA	2245	72.43336	4
CGAGGGA	1055	72.17021	3
AAGCGGG	1275	71.88194	2