SRR3128407.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128407.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	995131
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15489	1.5564784937862453	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	5338	0.5364117890006441	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCCAAATGC	5058	0.5082747899522776	No Hit
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	4615	0.4637580378864692	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	3907	0.39261162600702826	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2237	0.2247945245399852	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1860	0.186910065107006	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATG	1696	0.1704298228072485	No Hit
CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	1560	0.15676328041232762	No Hit
ATCCGTACACCCACACCTGTCTCTTATACACATCTGACGCCCAAATGCTC	1223	0.12289839227197223	No Hit
AGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	1223	0.12289839227197223	No Hit
ACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	1217	0.12229545657807867	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGG	1147	0.11526120681598705	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGG	1047	0.10521227858442757	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6455	86.90161	1
TACGGGT	65	79.53651	3
TAGGGCA	560	78.890915	4
AAGGGTA	575	77.65027	4
GGTAAGG	465	76.850075	1
CGTAGGG	180	73.109314	2
GTAGGGA	730	72.10782	3
AGGGCAT	985	72.048996	5
AGGGTAA	470	71.99823	5
GAATAGG	490	71.96955	1
AGTAGGG	1520	71.42587	2
TACGGGG	395	71.39065	3
ATAGGGT	370	71.133385	3
GATTAGG	245	71.00996	1
ATAGGGC	570	70.91054	3
AATAGGG	1350	70.324196	2
ATAGGGA	865	70.09076	3
ATAGAGG	545	69.883095	1
AGTAAGG	525	69.85845	1
AGGGTAC	385	69.58271	5