SRR3128405.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128405.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1838436
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22819	1.2412180788452793	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTTCTCTGC	7724	0.42013972746399664	No Hit
CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	6220	0.33833105966158195	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	5994	0.32603800186680415	TruSeq Adapter, Index 23 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	5342	0.2905730740694808	TruSeq Adapter, Index 23 (95% over 23bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3713	0.20196514863721118	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3545	0.19282694638268616	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	2286	0.12434482353478717	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATG	2223	0.12091799768934029	No Hit
AGAGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT	1840	0.10008507231146475	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	7850	86.30012	1
GAATAGG	1075	79.649216	1
TACGGGT	80	76.36793	3
CGTAGGG	395	74.95508	2
CCGTACA	3180	73.44917	3
ACGGGAT	570	73.37917	4
TCCGTAC	3320	72.05055	2
ATAACGG	85	71.95202	1
ATCCGTA	3375	71.50923	1
AGTAGGG	2500	70.49347	2
CGTACAC	3305	70.386826	4
AGGGTAC	780	69.89096	5
TAGGGCA	920	69.47183	4
ATAGCGG	320	69.09815	1
CGAAGGG	1680	69.094795	2
ATAGAGG	1165	68.65016	1
GTAGGGC	815	68.61941	3
ATAGGGA	1420	68.17679	3
ATAGGGC	855	67.60777	3
GGATAGG	1060	67.01772	1