SRR3128395.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128395.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2116240
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27752	1.3113824518958153	No Hit
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	5930	0.2802139643896722	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	5685	0.2686368275809927	TruSeq Adapter, Index 20 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG	5385	0.25446074169281363	TruSeq Adapter, Index 23 (95% over 21bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGACCTTA	4952	0.23399992439420858	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3281	0.15503912599705139	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2532	0.11964616489623106	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2305	0.10891959324084224	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	9730	86.93437	1
ACGGGTA	265	74.49424	4
AGGGATG	2725	73.9963	5
AGGGCAT	2050	73.828026	5
AATGCGG	445	72.90584	1
TACGGGT	220	72.639946	3
ATAGCGG	370	72.434654	1
CGTAGGG	640	71.97229	2
AGGGATC	1635	71.58151	5
GTACGGG	480	71.48269	2
AAGGGCA	3785	71.2796	4
GAGGGTA	1375	70.75985	4
CGAAGGG	1990	70.149185	2
TAAGGGA	1620	69.923195	3
AGAGGGC	2680	69.80195	3
AGGGTAT	1315	69.69925	5
TAGACGG	405	69.657745	1
GGTAAGG	1195	69.64317	1
TAGGGTA	920	69.48168	4
CCGTACA	2355	69.256065	3