SRR3128370.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128370.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1881727
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27672	1.4705640084879477	No Hit
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	7099	0.37725982568140864	RNA PCR Primer, Index 38 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	6545	0.3478187856155542	RNA PCR Primer, Index 27 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	6184	0.3286342811683097	RNA PCR Primer, Index 38 (95% over 23bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3504	0.1862119212829491	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2669	0.14183779049777148	No Hit
CGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	2309	0.12270642872212599	RNA PCR Primer, Index 38 (95% over 21bp)
AGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	2175	0.11558531072785798	RNA PCR Primer, Index 38 (95% over 21bp)
AAAGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	2069	0.10995218753836236	No Hit
AGAGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	2051	0.1089956194495801	No Hit
GGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	1950	0.10362820961807957	RNA PCR Primer, Index 38 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8925	86.0478	1
TAGGGTA	710	74.209656	4
AGGGATG	2485	73.9515	5
AGGGCAT	1710	73.38576	5
TAAGGGA	1285	72.853546	3
AGGGTAC	810	72.53066	5
AGTAGGG	2905	72.38726	2
ATAGGGA	1525	71.87648	3
TAGGGCG	355	71.55931	4
CGAAGGG	1920	71.5455	2
TAGCGGG	1025	70.22121	2
ACGGGTC	215	70.01841	4
TAGGGCA	800	69.97739	4
ACGGGTA	195	69.96231	4
GAATAGG	1025	69.78266	1
GAGGGAT	2060	69.65196	4
AAGGGAT	2970	69.53586	4
GTAGGGA	1445	69.344574	3
GTAGGGT	855	69.327446	3
TAGAGGG	2935	69.24308	2