SRR3128344.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128344.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2291012
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30644	1.337574835924037	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3895	0.17001220421368374	No Hit
CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTG	3799	0.1658219162536032	Illumina PCR Primer Index 8 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTG	3478	0.15181064088708396	Illumina PCR Primer Index 8 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	3404	0.14858062725118856	Illumina PCR Primer Index 8 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3027	0.132125017241289	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCAGGGAAGC	2773	0.12103821368024262	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2431	0.10611031282245575	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	9665	85.4521	1
TAGGGTA	1145	76.76296	4
TAGGGCA	1285	72.78896	4
GTAGGGT	1200	71.677925	3
GAGGGAT	2635	70.993416	4
AGGGTAC	1385	70.92709	5
ATAGGGA	2010	70.85364	3
AGGGATG	3355	70.32776	5
AGGGCAT	2095	69.998085	5
CGTAGGG	760	69.88443	2
TAGGGCG	390	68.695114	4
CCGTACA	1630	68.34022	3
AAGGGTA	1695	67.660576	4
AGATAGG	1530	67.62874	1
TAAGGGA	1920	67.32046	3
AGTAGGG	4040	66.89629	2
TAGAGGG	4385	66.7781	2
AGGGAAT	2535	66.74828	5
TAGAAGG	1815	66.59729	1
GGTAAGG	1410	66.37951	1