SRR3128341.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128341.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2405337
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29456	1.224610106608762	No Hit
CCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTG	6034	0.2508588193670991	Illumina PCR Primer Index 5 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	5857	0.24350018313442148	Illumina PCR Primer Index 5 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTG	5600	0.23281560962143769	Illumina PCR Primer Index 5 (95% over 22bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGCATGATT	3903	0.1622641650629413	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3235	0.13449258877238407	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2862	0.11898540620295618	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2635	0.1095480591700872	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	10580	84.6403	1
CGTAGGG	600	76.76986	2
AGGGTAT	1400	72.850006	5
ACGGGTA	195	72.30919	4
AGGGCAT	2335	72.05995	5
TAGGGCA	1665	71.98348	4
AGTAAGG	1565	71.52511	1
TAGGGTA	725	71.31183	4
GGTAAGG	1390	70.040855	1
TAGAGGG	4280	69.29494	2
AGTAGGG	4040	69.223175	2
ATAGGGC	1795	68.86637	3
AGGGATG	3215	68.56299	5
GAATAGG	1370	68.31694	1
AGAGGGC	3450	67.57382	3
AAGGGTA	1640	67.34896	4
AGGGAAT	2100	66.919044	5
GTAGGGC	1070	66.76913	3
TGAAGGG	3840	66.5861	2
CGAAGGG	2090	66.56736	2