SRR3128340.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128340.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2094812
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25193	1.2026377546051865	No Hit
CCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTG	4751	0.226798395273657	Illumina PCR Primer Index 5 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	4638	0.22140411645531913	Illumina PCR Primer Index 5 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTG	4472	0.21347977766023873	Illumina PCR Primer Index 5 (95% over 22bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2371	0.11318438122370886	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2276	0.1086493680578496	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGCATGATT	2138	0.10206166472218033	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	9455	84.9951	1
CGTAGGG	575	77.750145	2
GGTAAGG	1260	72.48584	1
AGTAAGG	1290	72.2599	1
AGGGCAT	1920	72.218346	5
AGGGATG	2955	71.89649	5
TAGGGCA	1275	70.496666	4
ATAGCGG	335	70.266304	1
CGAAGGG	1945	70.165535	2
AGGGTAA	925	69.61545	5
TAAGGGA	1580	69.397575	3
AGTAGGG	3310	69.38048	2
AAGGGTA	1360	68.5128	4
TAGAGGG	3580	68.22284	2
AAGGGAT	3395	67.92063	4
AGGGTAT	1060	67.84413	5
ACGGGTA	160	67.64774	4
AGAGGGC	3195	67.45902	3
GAGGGTA	1120	67.22757	4
TATAGGG	1425	67.03886	2