SRR3128336.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128336.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1498689
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19325	1.2894603216544593	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCAACCCATG	5062	0.33776187054151996	No Hit
CCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTG	4414	0.29452408071321	RNA PCR Primer, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTGC	4267	0.28471550802067674	RNA PCR Primer, Index 16 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTG	4214	0.2811790838526205	RNA PCR Primer, Index 14 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2994	0.19977460300302463	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2811	0.18756393087558526	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	1767	0.11790304726330814	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1638	0.1092955242882279	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATG	1569	0.10469150037132455	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6105	85.57118	1
ACGGGTA	160	76.36953	4
TAGGGTA	570	75.85421	4
AGGGTAC	805	73.559944	5
GAGGGAT	1465	73.14152	4
CGTAGGG	415	72.47673	2
GTACGGG	325	72.30251	2
AGTAGGG	2460	72.21433	2
CCGTACA	2155	71.967	3
ATAGGGA	1170	71.900826	3
GATTAGG	475	71.33934	1
AGTACGG	165	71.30932	1
GTAGGGC	620	71.25296	3
TCCGTAC	2315	71.05322	2
GTAGGGA	1120	70.914566	3
AGGGCAT	1160	70.90009	5
AGGGTAT	790	70.7924	5
GAATAGG	725	70.75852	1
TAGGGCA	705	70.6616	4
ATCCGTA	2375	69.95219	1