SRR3128334.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128334.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1442031
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20914	1.4503155618707226	No Hit
CCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTG	4132	0.28654030322510404	RNA PCR Primer, Index 16 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTG	3779	0.2620609404374802	RNA PCR Primer, Index 14 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTGC	3771	0.2615061673431431	RNA PCR Primer, Index 16 (95% over 23bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3103	0.21518261396599658	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCAACCCATG	1543	0.10700186057026513	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1533	0.10630839420234378	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6295	87.64107	1
GTAGGGC	665	77.83877	3
TAGGGTA	710	77.54476	4
ACGGGTA	155	75.89851	4
GAATAGG	980	75.413536	1
AGGGTAC	755	74.079414	5
AATGCGG	280	73.97252	1
AGTAGGG	2390	73.440544	2
AGGGATG	1720	72.95925	5
GTAGGGT	825	71.86899	3
ATAGAGG	730	71.57739	1
ATAAGGG	1930	71.19516	2
AGGGCAT	1170	70.7008	5
AGGGTAA	845	70.639	5
TAGGGCA	740	70.58562	4
TGTAGGG	975	69.98232	2
GATTAGG	440	69.54028	1
CGTAGGG	360	69.27847	2
GCATAGG	355	68.95262	1
ATAGGGC	845	68.497284	3