SRR3128330.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128330.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2018513
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25105	1.2437373452635676	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCATTGCGTC	5341	0.26460072340381263	No Hit
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	5278	0.26147961395343994	Illumina PCR Primer Index 3 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	5128	0.2540484009763623	TruSeq Adapter, Index 14 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	5039	0.2496392146099629	TruSeq Adapter, Index 14 (95% over 24bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4972	0.2463199394802015	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3652	0.18092526528191794	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	3217	0.15937474764839266	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	7665	84.514824	1
TAGGGTA	565	83.17841	4
CCGTACA	2305	75.64184	3
TCCGTAC	2480	74.85218	2
GAATAGG	1140	74.69385	1
ATCCGTA	2515	74.6356	1
GTAGGGA	1425	74.53369	3
CGTACAC	2365	73.524086	4
CGTAGGG	560	73.01134	2
TAGGGCG	380	72.96716	4
AGTAGGG	3245	72.122986	2
ATAGGGA	1615	71.87593	3
GTACGGG	420	71.61265	2
TATAGGG	1675	71.545845	2
GTAGGGT	740	71.128784	3
AGGGATG	2720	70.839264	5
AGTAAGG	1170	70.768166	1
GGTAAGG	1060	70.567116	1
TAGGGCA	970	70.25146	4
TAGACGG	225	68.99896	1