SRR3128318.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128318.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2508151
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35581	1.418614748474075	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	5803	0.23136565541707815	Illumina Single End Adapter 1 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4509	0.17977386528960976	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	4154	0.16562001251120845	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCGCTAGT	3989	0.15904146121983884	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3654	0.14568500859796718	No Hit
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	3440	0.1371528269230999	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3017	0.12028781361249781	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	2512	0.10015345966012414	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	11620	86.085754	1
ATAGCGG	590	81.3434	1
CCGTACA	1710	75.57874	3
AGGGATG	3935	75.122314	5
AGTACGG	315	74.68504	1
TCCGTAC	1840	72.793076	2
GTACGGG	640	71.96298	2
ATAACGG	240	70.57736	1
TATAGGG	2080	69.81652	2
AATGCGG	655	69.67943	1
CGTACAC	1845	69.53914	4
TAGCGGG	1455	69.4446	2
ATAGGGA	2260	69.24666	3
ATCCGTA	1965	69.20053	1
GGTAAGG	1375	69.12303	1
AGTAGGG	4350	69.03585	2
TAAGGGA	2180	68.122986	3
ATAGGGC	1425	67.938416	3
ATAGAGG	1780	67.93401	1
AAGGGAT	4285	67.450836	4