SRR3128308.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128308.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1761884
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23799	1.3507699712353367	No Hit
CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG	6324	0.35893395932989913	No Hit
CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	5790	0.32862549407338965	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG	5323	0.3021197763303373	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCACCATAGA	3837	0.21777824192739134	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3236	0.18366702915742467	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2174	0.12339064319784958	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2109	0.11970141053554036	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8185	86.341255	1
GAATAGG	965	76.985306	1
GTAGGGT	925	73.679054	3
AGGGCAT	1320	72.993706	5
ATAGCGG	355	72.84712	1
TAGGGTA	735	71.62234	4
AGGGATG	2415	71.42568	5
CGTAGGG	470	71.00326	2
TAGGGCA	855	69.81607	4
AGTAGGG	2875	69.481445	2
GAGGGAT	2200	69.22136	4
CCGTACA	1765	68.97201	3
AGAGGGC	2405	68.793175	3
TAAGGGA	1655	68.728226	3
CTACGAC	705	68.66787	5
GTAGGGA	1105	68.48278	3
ATAGAGG	1245	68.35768	1
TCCGTAC	1850	68.34367	2
CGTACAC	1795	68.342964	4
AGGGTAC	685	67.9282	5