SRR3128273.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128273.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1717919
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22181	1.2911551708782545	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCACAATCCC	7237	0.421265496219554	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	5868	0.3415760580097199	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	5674	0.33028332534886684	No Hit
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	5283	0.3075232301406527	TruSeq Adapter, Index 13 (95% over 21bp)
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3041	0.17701649495697994	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2421	0.14092631841198566	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2097	0.1220662906691177	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATG	2025	0.11787517339292482	No Hit
AGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	1971	0.11473183543578017	No Hit
AGAGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT	1927	0.11217059710032895	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6905	86.82143	1
TAGGGTA	560	78.04761	4
CGTAGGG	430	77.59872	2
TAGGGCA	835	76.545044	4
GATTAGG	335	74.44786	1
CCGTACA	2890	73.34041	3
GTAGGGA	1270	72.89994	3
AGTAGGG	2670	72.870834	2
TCCGTAC	3005	72.56683	2
ATCCGTA	3020	72.29898	1
CGTACAC	2895	72.23972	4
GTAGGGC	680	71.18573	3
AGGGCAT	1495	71.04473	5
ATAGGGA	1360	70.494606	3
GTAGGGT	630	70.12162	3
GGTAAGG	965	69.73165	1
ATAAGGG	2050	69.69223	2
AGGGATG	2020	69.56399	5
TAGGGAT	980	69.5355	4
AAGGGCG	565	69.03897	4