SRR3128272.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128272.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1890572
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26902	1.4229555922757768	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	6360	0.33640612470723147	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	6200	0.32794307754478536	No Hit
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	5896	0.3118632879361378	TruSeq Adapter, Index 13 (95% over 21bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCACAATCCC	4158	0.21993343813406738	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2772	0.14662229208937824	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2470	0.13064829057026128	No Hit
AGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	2115	0.11187090467858404	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2109	0.11155354040999232	No Hit
AGAGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT	1990	0.10525914908292304	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8455	86.20535	1
CGTAGGG	540	76.60069	2
TAGGGCA	930	74.29818	4
ATGCGGG	890	72.88412	2
AGGGAAT	1605	70.871666	5
AGTAGGG	2870	70.58935	2
AATGCGG	495	70.29795	1
GGTAAGG	985	70.1774	1
TAGGGTA	830	69.657974	4
GTAGGGT	800	69.33234	3
GAGGGAT	2375	68.87465	4
GTAGGGA	1305	68.796555	3
GATTAGG	480	68.576126	1
CCGTACA	1785	67.67663	3
ATAAGGG	2370	67.4333	2
ATAGGGA	1460	67.28794	3
AGGGTAC	745	66.87779	5
TAAGGGA	1505	66.83764	3
AGTAAGG	950	66.82306	1
ACGGGAT	500	66.74706	4