SRR3128271.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128271.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1645917
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23383	1.4206670202689442	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	5223	0.31733070379612094	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	5186	0.31508271680771266	No Hit
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	4685	0.2846437578565626	TruSeq Adapter, Index 13 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2523	0.15328841004740823	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCACAATCCC	2099	0.12752769428835112	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2052	0.12467214324902168	No Hit
AGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	1755	0.10662749093666327	No Hit
AGAGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT	1661	0.10091638885800437	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	7635	88.893005	1
TAGGGCA	750	81.564476	4
TAGGGCG	230	75.69946	4
CGTAGGG	390	74.807655	2
GTAGGGT	655	73.27871	3
AGTAGGG	2525	73.05393	2
TAGGGTA	575	72.83516	4
AGGGATG	2080	71.639534	5
AGGGCAT	1560	71.413536	5
ATAAGGG	2065	71.325226	2
GTAGGGC	715	71.07824	3
GGTAAGG	890	70.86408	1
AGGGAAT	1405	70.59321	5
GTAGGGA	1115	69.21304	3
AGGGTAC	780	68.70163	5
GCATAGG	475	68.37021	1
AGTAAGG	770	67.84903	1
ATAGGGA	1235	67.44119	3
TAAGGGA	1235	67.44119	3
CGAGGGA	775	67.39694	3