SRR3128266.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128266.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2957030
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45640	1.5434405467648282	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	8606	0.291035261732211	TruSeq Adapter, Index 21 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	7435	0.25143471659063316	No Hit
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	6911	0.2337142335383814	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4210	0.14237258330148833	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4048	0.13689411335021964	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3444	0.11646821303808214	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTATAGGAC	3411	0.11535222841837925	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	12830	86.71615	1
TAGGGCA	1375	71.78077	4
ATAGGGA	2415	71.61922	3
AGGGATG	3950	70.91422	5
TAGGGCG	530	70.05558	4
AGATAGG	1490	69.114586	1
AGTAGGG	4360	69.098785	2
CGTAGGG	920	68.96755	2
GAATAGG	1780	68.42136	1
TAGGGTA	795	67.98643	4
ATAGGGC	1760	67.56266	3
AAGGGAT	4265	67.551186	4
GAGGGAT	3375	67.53976	4
ATAGAGG	2015	67.442665	1
GTAGGGT	880	67.295616	3
ACGGGTA	245	67.14188	4
AGGGCAT	2475	67.032234	5
TAGACGG	275	66.6874	1
GTAGGGC	1430	66.39176	3
ATAAGGG	3845	65.88572	2