SRR3128249.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128249.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1051343
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11778	1.120281392466588	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTCAATCC	7066	0.6720927423305239	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	4184	0.39796717151300764	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	3937	0.374473411626843	TruSeq Adapter, Index 22 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	3386	0.3220642549577065	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3107	0.2955267690943869	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2221	0.21125360610190963	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATG	2174	0.20678313357296332	No Hit
ATCCGTACACCCACACCTGTCTCTTATACACATCTGACGCGTCAATCCTC	1554	0.14781094276558648	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1387	0.1319264978223092	No Hit
AGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1199	0.11404460770652394	No Hit
ACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	1140	0.10843273793614454	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5490	0.0	88.35792	1
TACGGGT	40	1.036824E-9	82.24342	3
CGAGGGA	620	0.0	79.5904	3
ACGGGTA	120	0.0	78.32707	4
CGAAGGG	880	0.0	77.97104	2
CACGGGT	85	0.0	77.40558	3
CCGTACA	2635	0.0	77.048874	3
TCCGTAC	2770	0.0	75.83871	2
TCCGCTA	680	0.0	75.4183	1
GTAGGGC	425	0.0	75.19399	3
CGTACAC	2690	0.0	75.12411	4
TAGGGCA	640	0.0	74.90026	4
GCGGGAT	560	0.0	74.69045	4
ATCCGTA	2860	0.0	74.02963	1
CTACGAC	680	0.0	73.949974	5
CGCTACG	690	0.0	72.878235	3
AGGGATG	1660	0.0	71.6268	5
ATAAGGG	1440	0.0	71.14709	2
GCATAGG	395	0.0	70.27713	1
AGGGCAT	1100	0.0	70.06712	5