SRR3128248.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128248.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1168901
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14412	1.2329530045743822	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	4673	0.3997772266428038	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	4400	0.3764219553238469	TruSeq Adapter, Index 22 (95% over 21bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTCAATCC	4233	0.3621350311104191	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3630	0.3105481131421737	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	3621	0.30977815914264767	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1602	0.13705181191563698	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1388	0.11874401681579536	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATG	1204	0.10300273504770721	No Hit
AGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1195	0.10223278104818116	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6620	86.58047	1
CGAAGGG	1010	80.041275	2
AGGGATG	2025	79.14734	5
CGAGGGA	565	77.36445	3
ACGGGAT	450	75.20158	4
TAAGCGG	240	74.446884	1
GTAGGGC	435	73.4728	3
AGGGCAT	1330	73.15191	5
AAGGGAT	2225	72.66669	4
TAGGGCA	745	71.92097	4
AAGGGCA	1925	70.80668	4
GAAGGGT	1105	70.60781	3
CCGTACA	1865	70.06045	3
GGATGGC	1510	70.03458	7
CTACGAC	680	69.81029	5
CGTACAC	1875	69.68679	4
GCATAGG	500	69.58824	1
GGTAAGG	630	69.40913	1
ATAGGGC	835	69.234985	3
GAGGGAT	2080	69.145676	4