SRR3128247.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128247.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1010764
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12446	1.2313457938747325	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	3886	0.3844616547482894	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	3568	0.353000304719994	TruSeq Adapter, Index 22 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	3166	0.31322840940120544	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3048	0.3015540719693222	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTCAATCC	2214	0.21904222944228324	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1334	0.1319793740180695	No Hit
AGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1032	0.10210098499748704	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5505	87.448616	1
AGGGATG	1810	75.563416	5
CGCTACG	620	73.58675	3
AGGGAAT	1165	73.424774	5
CTACGAC	630	73.111	5
TCGAAGG	265	72.80691	1
AAGGGAT	2120	72.549	4
ACGACCA	630	72.36138	7
GGATGGC	1325	72.35857	7
GCTACGA	640	72.02208	4
CGAGGGA	615	71.89063	3
AAGGGCA	1640	71.412636	4
TCCGCTA	635	71.14299	1
AAGGGAC	1060	70.995964	4
TAGGGCA	605	70.746605	4
CGAAGGG	925	70.67937	2
AGGGTAC	500	70.49989	5
TAGAGGG	1620	69.971565	2
GGTAAGG	565	69.962524	1
AGGGCAT	1070	69.40176	5