SRR3128236.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128236.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2423571
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34188	1.410645695958567	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	6644	0.27414092675642676	RNA PCR Primer, Index 10 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	6557	0.270551182531892	TruSeq Adapter, Index 10 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	5816	0.23997646448154397	RNA PCR Primer, Index 35 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4347	0.17936342694313473	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGTTTGTC	4319	0.17820810696282469	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3334	0.13756560051263197	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3246	0.133934594860229	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	11805	86.48315	1
ATAGCGG	560	78.09668	1
GGTAAGG	1305	74.5929	1
TAGGGCA	1210	74.191246	4
AGGGCAT	2515	72.50708	5
GTACGGG	555	71.98311	2
GTAGGGA	1705	71.94833	3
AGTAGGG	3495	71.40884	2
CGTAGGG	595	71.093544	2
AAGGGTA	1650	70.928375	4
CGAGGGA	1300	70.5011	3
AGGGATG	3790	70.06416	5
ATAGGGA	1945	69.836555	3
AGGGTAC	1240	69.74015	5
TAAGGGA	2095	69.32327	3
AAGGGAC	2510	69.28395	4
TAGCGGG	1480	68.595665	2
AAGGGCA	4140	68.45759	4
CGAAGGG	2365	68.16597	2
AGAGGGC	3255	67.86588	3