Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128222.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2078517 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28901 | 1.3904625268881612 | No Hit |
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG | 3209 | 0.15438892248656133 | No Hit |
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC | 3140 | 0.15106924793013482 | No Hit |
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTGGTGGCT | 3123 | 0.15025135709739204 | No Hit |
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA | 3120 | 0.15010702342102566 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 3027 | 0.14563267945366817 | No Hit |
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG | 2426 | 0.11671783295493854 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 9365 | 0.0 | 84.82506 | 1 |
GTAGGGA | 1500 | 0.0 | 72.689354 | 3 |
TCCGTAC | 1660 | 0.0 | 71.34549 | 2 |
ATAGGGC | 1295 | 0.0 | 71.13123 | 3 |
CGTAGGG | 675 | 0.0 | 71.01833 | 2 |
AGGGATG | 3035 | 0.0 | 70.61228 | 5 |
ATAGAGG | 1555 | 0.0 | 70.51558 | 1 |
ATCCGTA | 1710 | 0.0 | 69.90321 | 1 |
AGTAGGG | 3415 | 0.0 | 69.49839 | 2 |
CCGTACA | 1680 | 0.0 | 69.377144 | 3 |
CGAAGGG | 2170 | 0.0 | 69.08838 | 2 |
TAGGGCA | 970 | 0.0 | 68.80036 | 4 |
GAATAGG | 1355 | 0.0 | 68.76784 | 1 |
ATAGGGA | 1620 | 0.0 | 68.75549 | 3 |
CGTACAC | 1705 | 0.0 | 68.08425 | 4 |
TAAGGGA | 1905 | 0.0 | 67.844055 | 3 |
AAGGGAT | 3275 | 0.0 | 67.733696 | 4 |
ATAAGGG | 3025 | 0.0 | 66.80626 | 2 |
TATAGGG | 1625 | 0.0 | 66.51943 | 2 |
AGTAAGG | 1295 | 0.0 | 66.139534 | 1 |