SRR3128219.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128219.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2142699
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26930	1.256826087098561	No Hit
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	3979	0.18570037135407258	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCACCTCGTT	3971	0.18532701046670577	No Hit
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	3823	0.17841983405041958	TruSeq Adapter, Index 14 (95% over 22bp)
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3674	0.17146598752321254	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3665	0.17104595652492488	No Hit
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG	3595	0.1677790487604652	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	2145	0.10010738792522889	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8410	84.7255	1
GAATAGG	1315	75.10884	1
GGTAAGG	1090	75.0793	1
CCGTACA	2200	74.55135	3
AGTAGGG	3550	72.67696	2
TAGGGCA	1115	72.49471	4
TCCGTAC	2325	71.95812	2
CGTACAC	2275	70.85418	4
GTAGGGA	1710	70.6301	3
TAAGGGA	1880	70.49269	3
AGGGATG	2830	70.07754	5
ATCCGTA	2405	69.81531	1
GTAGGGC	1015	69.45092	3
AAGGGTA	1470	69.37376	4
ATAGGGA	1965	68.63919	3
ATGTAGG	600	68.19704	1
ATAGGGC	1255	68.15228	3
TAGGGAT	1465	68.0066	4
AATAGGG	3290	67.56442	2
ATAAGGG	2905	67.29767	2