SRR3128213.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128213.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1064117
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13123	1.2332290528203196	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTGGCAAC	4561	0.4286182816363239	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	3633	0.34140982617512927	RNA PCR Primer, Index 34 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	2946	0.27684925623780093	RNA PCR Primer, Index 34 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	2682	0.25203995425315073	TruSeq Adapter, Index 18 (95% over 22bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2668	0.25072430945093443	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2447	0.2299559165016629	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATG	1383	0.12996691153322426	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCT	1178	0.11070211264362848	RNA PCR Primer, Index 34 (95% over 23bp)

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5580	88.27555	1
CTAACGG	85	83.02335	1
ATAGCGG	180	81.02464	1
CGAAGGG	990	75.95269	2
CGTAGGG	300	75.19315	2
TAGCGGG	555	74.51574	2
CCGTACA	1975	74.4793	3
TCCGTAC	2095	73.80235	2
AGGGATG	2065	73.50905	5
AGGGAAT	1255	72.646774	5
CGTACAC	2015	72.53434	4
TAACGGG	350	72.50769	2
TAGGGCA	590	72.48493	4
TAGGGCG	150	72.060104	4
AGTAGGG	1645	70.56501	2
CTACGAC	480	70.49359	5
GTAAGGG	1550	70.34199	2
TGTAGGG	675	70.31953	2
AAGAGGG	3755	70.08683	2
ATAAGGG	1315	70.04687	2