SRR3128212.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128212.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1188189
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15900	1.3381709475512733	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	3783	0.31838369148342566	RNA PCR Primer, Index 34 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	3052	0.2568614925739929	RNA PCR Primer, Index 34 (96% over 25bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2982	0.2509701739369747	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	2829	0.23809343463034924	TruSeq Adapter, Index 18 (95% over 22bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTGGCAAC	2641	0.22227103600521467	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1776	0.1494711699906328	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCT	1325	0.11151424562927277	RNA PCR Primer, Index 34 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAGGGCG	185	88.91721	4
CGTTTTT	6395	87.85801	1
CGAAGGG	1125	80.629555	2
AGGGATG	2600	77.36774	5
ATAGCGG	235	76.02733	1
AGGGCAT	1235	73.82854	5
TAGGGCA	740	73.67426	4
AAGGGCA	1850	73.16615	4
AAGGGAT	2655	72.578636	4
TCCGCTA	585	72.333694	1
GCGGGAT	715	72.3063	4
TACGGGT	105	71.61767	3
CGTAGGG	355	71.49158	2
AGTAGGG	1825	71.33561	2
GAAGGGT	1155	71.21075	3
TAGCGGG	685	69.984055	2
GAGGGAT	1930	69.88985	4
AAGAGGG	3730	69.55363	2
AGAGGGC	1605	69.400536	3
CTACGAC	605	69.13916	5