SRR3128211.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128211.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1011883
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14032	1.3867215873771968	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	3380	0.33403071303698156	RNA PCR Primer, Index 34 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	2735	0.27028816572666997	RNA PCR Primer, Index 34 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	2441	0.24123342323173727	TruSeq Adapter, Index 18 (95% over 22bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2391	0.2362921404945038	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTGGCAAC	1412	0.13954182449947278	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCT	1181	0.11671309825345419	RNA PCR Primer, Index 34 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5550	87.7694	1
TAGGGCA	635	77.78511	4
CGAAGGG	950	76.75188	2
TAGGGCG	215	76.57915	4
AGGGTAT	670	76.46209	5
ACGGGTA	105	76.162384	4
AGGGATG	2265	76.15393	5
GTACGGG	240	74.48233	2
TACGGGT	70	73.92232	3
CGAGGGA	655	73.255424	3
TAGCGGG	535	72.98023	2
AAGGGAT	2155	72.90882	4
AAGGGCA	1890	72.42893	4
CGTAGGG	275	71.84515	2
TCCGCTA	480	71.577644	1
AGGGATT	1265	71.3354	5
GAGGGAT	1690	71.25809	4
ATAGGGA	1050	71.23423	3
AGGGCGT	225	71.02167	5
AAGGGTA	770	70.867676	4