SRR3128201.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128201.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2533383
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38957	1.5377461678711826	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	5984	0.23620589543705	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	5759	0.22732449061196036	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	5005	0.19756191622032673	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCATGCAC	4874	0.19239096496660787	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	4110	0.16223366147163695	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3430	0.13539208244469944	No Hit
CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	2908	0.11478722325049154	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2764	0.10910312416243417	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	12015	87.190674	1
TAGGGCA	1180	78.86058	4
CGTAGGG	695	77.08978	2
CGTACAC	2420	76.905365	4
CCGTACA	2445	76.50344	3
TCCGTAC	2545	75.159424	2
GAATAGG	1465	73.5642	1
GGTAAGG	1380	72.979904	1
ATCCGTA	2665	72.57938	1
TAGGGTA	750	72.06317	4
AGTAGGG	3875	71.80039	2
TAGGGCG	395	71.38895	4
ATAGGGC	1495	71.36109	3
ATAGGGA	2320	71.1043	3
GTAGGGT	790	70.79404	3
GTAGGGC	1035	70.38306	3
AGGGCAT	1975	69.48524	5
GTAGGGA	1880	68.746666	3
AGAGGGC	3685	67.85017	3
AGGGATG	3285	67.671	5