SRR3128200.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128200.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2812243
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46625	1.6579292756707011	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	6635	0.23593267011421132	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	6469	0.23002990851075106	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	5370	0.19095078199145663	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3981	0.1415596020685268	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3258	0.11585058616911839	No Hit
CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	3012	0.10710312017844831	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2858	0.10162706423306948	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCATGCAC	2836	0.10084477052658679	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	14170	86.09272	1
TAGGGCA	1335	76.04597	4
CGTAGGG	770	75.69202	2
ACGGGTA	210	73.85814	4
AGATAGG	1760	72.41407	1
GAATAGG	1765	72.20892	1
GGTAAGG	1560	71.74947	1
TAGGGTA	760	71.7378	4
AGTAGGG	4405	71.38374	2
GTAGGGT	820	70.503456	3
AGTAAGG	1595	69.58532	1
ATAGGGC	1720	69.41038	3
TCCGTAC	1910	69.39607	2
CCGTACA	1870	68.86969	3
ATAGGGA	2620	68.70947	3
AGGGATG	3965	68.51542	5
GTAGGGA	2110	67.94172	3
CGAAGGG	2855	67.82819	2
CGTACAC	1895	67.71067	4
AGGGCAT	2530	67.249916	5