SRR3128198.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128198.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2759373
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43262	1.5678199359057294	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	5272	0.19105789612350343	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	4418	0.16010883631897535	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCACTTTGCG	4248	0.15394801645156345	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3884	0.14075661391192854	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3550	0.1286524148783075	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	3542	0.1283624939433705	No Hit
CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	2817	0.10208840921470204	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	14950	86.41219	1
CCGTACA	2035	76.21216	3
TCCGTAC	2140	75.10816	2
ATCCGTA	2195	74.15787	1
CGTACAC	2070	73.561295	4
TAGGGCA	1545	73.31002	4
GTAGGGT	810	73.107216	3
GAATAGG	1515	71.11128	1
GGTAAGG	1635	70.78366	1
ATAGGGA	2170	70.17138	3
AGTACGG	255	70.10663	1
AGTAGGG	4455	69.836914	2
GTACGGG	575	69.47456	2
AGTAAGG	1545	68.51248	1
ATAGAGG	1805	68.02663	1
ATAGGGC	1625	67.965614	3
TATAGGG	2265	67.43571	2
CGTAGGG	585	66.680214	2
AGGGACT	3725	66.490425	5
TAGGGTA	780	66.27852	4