SRR3128189.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128189.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1619110
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35653	2.2020122165881255	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	3307	0.204248012797154	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3268	0.20183928207472007	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	2792	0.17244041479578287	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	2699	0.1666965184576712	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2267	0.1400151935322492	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	2138	0.13204785345035236	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT	2064	0.12747744131034952	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1979	0.12222764358196787	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCAAACAGT	1631	0.10073435405871126	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	11000	87.73511	1
GGTAAGG	1030	77.20579	1
CCGTACA	1055	76.62192	3
TAGGGCA	780	75.91943	4
TCCGTAC	1085	74.50564	2
ATAGGGC	940	74.49643	3
GAATAGG	820	74.02463	1
TAGGGTA	500	73.31648	4
AGGGATG	2595	71.7191	5
TATAGGG	1220	71.65452	2
TAAGGGA	1450	71.30692	3
GTAGGGT	570	70.90888	3
ATCCGTA	1160	70.58163	1
ATAGGGA	1435	70.087234	3
CGTAGGG	530	70.05541	2
AGTAGGG	2700	69.45437	2
CGTACAC	1145	69.36785	4
GTAGGGC	675	68.93002	3
GAGGGAT	1895	68.698555	4
AGGGCAT	1440	68.212006	5