SRR3128188.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128188.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1801943
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42711	2.3702747534189483	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	3844	0.2133252827642162	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	3263	0.18108230948481724	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	2875	0.15954999686449572	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2776	0.15405592740724872	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	2236	0.12408827582226517	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2206	0.12242340628976611	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2116	0.11742879769226884	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT	2107	0.11692933683251912	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	12465	87.541	1
GAATAGG	1045	77.83205	1
TAGGGCA	925	75.70989	4
AGATAGG	970	73.18699	1
GTAGGGC	800	72.85172	3
ATAGGGA	1590	72.7187	3
AGGGATG	2865	72.01916	5
GGTAAGG	1005	71.57379	1
TAAGGGA	1445	70.90825	3
GATAGGG	2710	70.41495	2
AGGGCAT	1505	69.95514	5
TAGGGTA	545	69.85486	4
TACGGGT	175	69.83022	3
GAGGGAT	2080	69.82376	4
ATAGGGC	1095	68.67742	3
CGTAGGG	620	68.22742	2
AGGGAAT	1925	68.12109	5
AAGGGTA	1005	67.812546	4
AAGGGAT	3120	67.79006	4
AGTAGGG	2950	67.71346	2